Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7142

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15509 and 15510 are separated by 117 nucleotides15510 and 15511 are separated by 525 nucleotides mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976,528 to 979,510 15509 mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979,628 to 983,826 15510 mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984,352 to 987,514 15511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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978,714 - 15509 mRNA_7141 0.73 -1.7
978,844 + 15509 mRNA_7141 0.78 -0.1
979,150 + 15509 mRNA_7141 0.88 -0.5
979,194 - 15509 mRNA_7141 0.89 +0.2
979,556 - +1.0
979,793 + +0.1
979,983 - +0.2
980,035 + -0.4
980,101 + 15510 mRNA_7142 0.11 +1.2
980,103 - 15510 mRNA_7142 0.11 +0.5
980,283 - 15510 mRNA_7142 0.16 -1.1
980,512 + 15510 mRNA_7142 0.21 +0.8
980,544 + 15510 mRNA_7142 0.22 -0.8
980,655 - 15510 mRNA_7142 0.24 +0.4
980,714 - 15510 mRNA_7142 0.26 +1.4
980,739 - 15510 mRNA_7142 0.26 +0.1
980,793 + 15510 mRNA_7142 0.28 +1.3
981,183 + 15510 mRNA_7142 0.37 +0.3
981,330 + 15510 mRNA_7142 0.41 +0.5
981,492 - 15510 mRNA_7142 0.44 +1.5
981,516 + 15510 mRNA_7142 0.45 +2.9
981,516 + 15510 mRNA_7142 0.45 +0.6
981,765 + 15510 mRNA_7142 0.51 -0.2
981,830 + 15510 mRNA_7142 0.52 +1.5
982,146 - 15510 mRNA_7142 0.60 +0.4
982,536 + 15510 mRNA_7142 0.69 +0.2
982,673 + 15510 mRNA_7142 0.73 +0.9
982,706 + 15510 mRNA_7142 0.73 +0.6
982,814 + 15510 mRNA_7142 0.76 -0.8
982,986 + 15510 mRNA_7142 0.80 +1.5
983,265 - 15510 mRNA_7142 0.87 -2.6
983,415 + +2.6
983,546 + -0.3
983,695 - +0.6
983,707 - +0.1
983,717 - -0.4
984,006 - -0.1
984,154 + +0.1
984,577 - +2.0
984,578 - -0.5
984,608 + +2.3
984,624 + -1.6

Or see this region's nucleotide sequence