Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7171

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15538 and 15539 are separated by 254 nucleotides15539 and 15540 are separated by 628 nucleotides mRNA_7170: 15538 - Hypothetical Protein, at 1,040,461 to 1,043,299 15538 mRNA_7171: 15539 - Hypothetical Protein, at 1,043,554 to 1,044,696 15539 mRNA_7172: 15540 - K01408 IDE, ide insulysin, at 1,045,325 to 1,049,371 15540

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,042,905 + 15538 mRNA_7170 0.86 +0.0
1,043,201 - +2.3
1,043,245 + +0.7
1,043,387 + -0.4
1,043,460 + -0.3
1,043,701 - 15539 mRNA_7171 0.13 +1.2
1,043,750 + 15539 mRNA_7171 0.17 -0.5
1,043,899 - 15539 mRNA_7171 0.30 -1.0
1,044,220 - 15539 mRNA_7171 0.58 +0.1
1,044,329 - 15539 mRNA_7171 0.68 -2.1
1,044,362 - 15539 mRNA_7171 0.71 +0.1
1,044,775 - +0.3
1,044,786 + +0.3
1,044,791 - +0.7
1,044,804 + +0.1
1,044,913 - +0.1
1,044,919 - -0.8
1,044,920 + -0.3
1,044,928 - -0.9
1,044,936 + +0.1
1,044,946 + +0.6
1,044,960 + +2.6
1,045,077 - -0.5
1,045,083 - +1.6
1,045,085 + +2.0
1,045,096 - +0.3
1,045,118 - +0.8
1,045,119 + -0.3
1,045,119 + -0.3
1,045,125 + +0.9
1,045,235 + +0.6
1,045,262 + +1.9
1,045,262 - +0.1
1,045,280 + +1.4
1,045,396 + +1.7
1,045,403 - -0.1
1,045,420 + +0.6
1,045,425 - -1.2
1,045,679 - -0.9

Or see this region's nucleotide sequence