Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7178

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15545 and 15546 are separated by 172 nucleotides15546 and 15547 are separated by 404 nucleotides mRNA_7177: 15545 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 1,057,170 to 1,058,665 15545 mRNA_7178: 15546 - KOG0417 Ubiquitin-protein ligase, at 1,058,838 to 1,059,935 15546 mRNA_7179: 15547 - Hypothetical Protein, at 1,060,340 to 1,061,881 15547

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,058,437 - 15545 mRNA_7177 0.85 +1.2
1,058,440 - 15545 mRNA_7177 0.85 -0.2
1,058,459 + 15545 mRNA_7177 0.86 +1.2
1,059,006 + 15546 mRNA_7178 0.15 +0.8
1,059,006 + 15546 mRNA_7178 0.15 -0.5
1,059,008 - 15546 mRNA_7178 0.15 +0.7
1,059,597 - 15546 mRNA_7178 0.69 +0.3
1,059,888 + +2.3
1,059,896 - -0.2
1,060,017 - +1.4
1,060,026 + +0.2
1,060,031 + +1.0
1,060,032 + -0.5
1,060,056 + +0.4
1,060,201 + +0.5
1,060,325 + +1.2
1,060,444 - +0.3
1,060,478 - +0.4
1,060,499 + 15547 mRNA_7179 0.10 +0.3

Or see this region's nucleotide sequence