Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7189

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15556 and 15557 are separated by 306 nucleotides15557 and 15558 are separated by 265 nucleotides mRNA_7188: 15556 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,079,394 to 1,083,450 15556 mRNA_7189: 15557 - K14847 RPF2 ribosome production factor 2, at 1,083,757 to 1,085,072 15557 mRNA_7190: 15558 - Hypothetical Protein, at 1,085,338 to 1,086,300 15558

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,083,497 - -2.2
1,083,646 - +0.2
1,083,656 + +0.9
1,083,661 - +1.2
1,083,668 - -0.5
1,085,431 + +0.2
1,085,553 + 15558 mRNA_7190 0.22 -0.7
1,085,994 + 15558 mRNA_7190 0.68 -0.5

Or see this region's nucleotide sequence