Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7196

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15563 and 15564 are separated by 334 nucleotides15564 and 15565 are separated by 507 nucleotides mRNA_7195: 15563 - KOG0519 Sensory transduction histidine kinase, at 1,094,977 to 1,103,696 15563 mRNA_7196: 15564 - KOG3329 RAN guanine nucleotide release factor, at 1,104,031 to 1,104,798 15564 mRNA_7197: 15565 - KOG0490 Transcription factor, contains HOX domain, at 1,105,306 to 1,105,458 15565

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,103,214 + +0.7
1,103,238 + -0.3
1,103,378 - +0.7
1,103,475 - -1.0
1,103,480 + +0.5
1,103,491 - +1.2
1,103,503 - +1.5
1,103,505 + +0.6
1,103,507 - -0.3
1,103,520 - -0.0
1,103,526 + +0.3
1,103,529 + -0.1
1,103,655 - +1.9
1,103,657 + -0.5
1,103,657 - -0.2
1,103,668 - +0.3
1,103,752 + -0.7
1,103,795 - -0.4
1,103,795 - +0.8
1,103,804 - +0.4
1,103,807 - +1.3
1,103,993 + +1.0
1,104,817 - -0.1
1,104,847 + -0.2
1,104,866 - +0.3
1,104,880 - +0.3
1,104,904 - +2.6
1,105,009 + -0.3
1,105,045 + +0.1
1,105,053 + -0.7
1,105,175 + +0.9
1,105,181 + +0.9
1,105,361 - 15565 mRNA_7197 0.36 +0.9
1,105,382 - 15565 mRNA_7197 0.50 +1.4
1,105,447 - +0.7
1,105,532 + +2.6
1,105,642 + +1.8

Or see this region's nucleotide sequence