Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7242

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15609 and 15610 are separated by 214 nucleotides mRNA_7241: 15609 - K01265 map methionyl aminopeptidase, at 1,202,900 to 1,205,057 15609 mRNA_7242: 15610 - K01265 map methionyl aminopeptidase, at 1,205,272 to 1,206,934 15610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,204,355 - 15609 mRNA_7241 0.67 +2.0
1,204,383 + 15609 mRNA_7241 0.69 -0.1
1,204,394 - 15609 mRNA_7241 0.69 +0.6
1,204,549 + 15609 mRNA_7241 0.76 +0.9
1,204,648 - 15609 mRNA_7241 0.81 +1.6
1,204,688 - 15609 mRNA_7241 0.83 +1.4
1,204,690 + 15609 mRNA_7241 0.83 +0.7
1,204,778 - 15609 mRNA_7241 0.87 +1.3
1,204,818 + 15609 mRNA_7241 0.89 +0.3
1,204,945 - +0.9
1,204,961 - +0.6
1,204,967 - +0.1
1,204,975 - -0.1
1,204,976 + +0.1
1,204,978 + +1.2
1,205,109 - +0.2
1,205,296 - +1.4
1,205,399 + +0.5
1,205,741 - 15610 mRNA_7242 0.28 -0.8
1,205,768 + 15610 mRNA_7242 0.30 +1.5
1,205,844 - 15610 mRNA_7242 0.34 +0.1
1,205,872 - 15610 mRNA_7242 0.36 -1.2
1,205,907 + 15610 mRNA_7242 0.38 -0.1
1,206,005 + 15610 mRNA_7242 0.44 +0.1
1,206,007 - 15610 mRNA_7242 0.44 -0.7
1,206,011 - 15610 mRNA_7242 0.44 -0.6
1,206,131 + 15610 mRNA_7242 0.52 +0.2
1,206,150 - 15610 mRNA_7242 0.53 +3.5
1,206,293 - 15610 mRNA_7242 0.61 +0.6
1,206,433 + 15610 mRNA_7242 0.70 -0.3
1,206,619 - 15610 mRNA_7242 0.81 -0.2
1,206,621 - 15610 mRNA_7242 0.81 -0.1
1,206,890 + +0.1
1,207,013 + -0.1
1,207,028 - +0.2
1,207,029 - -0.0
1,207,030 - +0.5
1,207,035 + +0.6
1,207,159 + -1.1
1,207,306 - -0.6
1,207,322 + +0.0
1,207,322 - +0.2
1,207,328 + +0.6
1,207,332 + +0.2
1,207,436 - -0.4
1,207,475 + +0.6
1,207,482 - +0.6
1,207,512 - +0.0

Or see this region's nucleotide sequence