Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7348

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15715 and 15716 are separated by 374 nucleotides15716 and 15717 are separated by 143 nucleotides mRNA_7347: 15715 - K09495 CCT3, TRIC5 T-complex protein 1 subunit gamma, at 59,702 to 62,348 15715 mRNA_7348: 15716 - KOG0364 Chaperonin complex component, TCP-1 gamma subunit (CCT3), at 62,723 to 63,875 15716 mRNA_7349: 15717 - K07207 TSC2 tuberous sclerosis 2, at 64,019 to 67,525 15717

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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62,393 - +0.3
62,400 + -0.9
62,591 + +0.7
62,865 + 15716 mRNA_7348 0.12 -2.9
63,727 + 15716 mRNA_7348 0.87 -0.4
63,791 + -0.1
64,589 - 15717 mRNA_7349 0.16 +0.5

Or see this region's nucleotide sequence