Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7349

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15716 and 15717 are separated by 143 nucleotides15717 and 15718 are separated by 504 nucleotides mRNA_7348: 15716 - KOG0364 Chaperonin complex component, TCP-1 gamma subunit (CCT3), at 62,723 to 63,875 15716 mRNA_7349: 15717 - K07207 TSC2 tuberous sclerosis 2, at 64,019 to 67,525 15717 mRNA_7350: 15718 - Hypothetical Protein, at 68,030 to 70,360 15718

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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63,727 + 15716 mRNA_7348 0.87 -0.4
63,791 + -0.1
64,589 - 15717 mRNA_7349 0.16 +0.5

Or see this region's nucleotide sequence