Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7366

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15733 and 15734 are separated by 251 nucleotides15734 and 15735 are separated by 811 nucleotides mRNA_7365: 15733 - Hypothetical Protein, at 102,943 to 104,194 15733 mRNA_7366: 15734 - SUPERFAMILY--SSF57701, at 104,446 to 105,512 15734 mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106,324 to 107,108 15735

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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103,447 - 15733 mRNA_7365 0.40 +0.1
103,574 - 15733 mRNA_7365 0.50 -0.5
103,580 + 15733 mRNA_7365 0.51 -0.6
103,858 + 15733 mRNA_7365 0.73 +0.6
104,182 + +2.2
104,346 + -1.0
104,461 - +0.0
104,583 + 15734 mRNA_7366 0.13 +0.0
104,749 + 15734 mRNA_7366 0.28 +0.4
104,875 - 15734 mRNA_7366 0.40 +0.4
104,968 + 15734 mRNA_7366 0.49 +0.4
105,039 + 15734 mRNA_7366 0.56 -0.0
105,136 - 15734 mRNA_7366 0.65 +0.9
105,190 - 15734 mRNA_7366 0.70 +2.1
105,193 + 15734 mRNA_7366 0.70 -2.5
105,656 - +0.2
105,677 + +0.3
105,758 + -0.2
105,799 + +0.3
105,805 - +0.7
105,809 - -0.8
105,911 + -0.2
105,913 - +0.5
105,915 + -0.1
105,938 - +0.6
105,942 - +0.8
105,943 + +0.9
105,955 - -0.4
106,231 - +0.1
106,235 + +0.4
106,237 - -0.0
106,254 - -0.3
106,271 + -0.2
106,271 - +0.2
106,274 + -0.9
106,387 + -0.2
106,387 - +0.3
106,408 + 15735 mRNA_7367 0.11 -0.2
106,408 - 15735 mRNA_7367 0.11 -0.8

Or see this region's nucleotide sequence