Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7381

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15749 and 15750 are separated by 47 nucleotides mRNA_7381: 15749 - K03128 TAF2 transcription initiation factor TFIID subunit 2, at 141,230 to 147,514 15749 mRNA_7382: 15750 - Hypothetical Protein, at 147,562 to 148,955 15750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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140,244 - +0.2
140,266 + +0.2
140,266 + +0.2
140,281 + +0.8
140,400 - +0.6
140,549 + +2.2
140,687 - +2.3
140,811 + +0.9
140,959 - -0.1
140,992 + +2.4
140,995 + -0.4
141,001 + +0.3
141,002 - -1.2
147,116 + -2.6
147,306 + +1.6
147,309 - -0.6
147,315 + -0.6
147,895 - 15750 mRNA_7382 0.24 +0.7
148,023 + 15750 mRNA_7382 0.33 +0.6
148,063 + 15750 mRNA_7382 0.36 +0.3
148,169 + 15750 mRNA_7382 0.44 +0.8
148,326 + 15750 mRNA_7382 0.55 +0.2
148,341 + 15750 mRNA_7382 0.56 +0.5
148,396 + 15750 mRNA_7382 0.60 -0.3
148,441 + 15750 mRNA_7382 0.63 +0.1
148,483 - 15750 mRNA_7382 0.66 +1.2

Or see this region's nucleotide sequence