Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7440

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15807 and 15808 are separated by 240 nucleotides mRNA_7439: 15807 - K20989 DUR3 urea-proton symporter, at 281,348 to 284,451 15807 mRNA_7440: 15808 - KOG0537 Cytochrome b5, at 284,692 to 285,285 15808

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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283,749 + 15807 mRNA_7439 0.77 -1.5
283,891 - 15807 mRNA_7439 0.82 +0.7
283,926 - 15807 mRNA_7439 0.83 +1.1
284,024 + 15807 mRNA_7439 0.86 -1.4
284,195 + +0.2
284,355 - -0.5
284,588 + -0.1
284,618 - -0.4
284,646 + -0.6
284,779 + 15808 mRNA_7440 0.15 -1.4
284,909 - 15808 mRNA_7440 0.37 -1.0
285,022 + 15808 mRNA_7440 0.56 +1.4
285,047 + 15808 mRNA_7440 0.60 -0.0
285,059 + 15808 mRNA_7440 0.62 +0.8
285,127 - 15808 mRNA_7440 0.73 -1.7
285,188 + 15808 mRNA_7440 0.84 -0.3
285,197 - 15808 mRNA_7440 0.85 +0.6
285,210 + 15808 mRNA_7440 0.87 +0.6
285,221 - 15808 mRNA_7440 0.89 +0.5
285,230 + +1.5
285,348 - -0.2
285,354 + +0.2
285,357 - +1.1
285,357 - -1.1
285,358 - +1.2
285,367 + -0.2
285,376 + +0.9
285,385 + +0.2
285,388 + +1.8
285,400 - +1.3
285,532 + +1.2
285,717 - +0.3

Or see this region's nucleotide sequence