Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7456

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15823 and 15824 are separated by 355 nucleotides mRNA_7455: 15823 - KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17, at 315,184 to 315,974 15823 mRNA_7456: 15824 - Hypothetical Protein, at 316,330 to 316,788 15824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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315,827 + 15823 mRNA_7455 0.81 -0.0
315,848 + 15823 mRNA_7455 0.84 -2.2
315,980 + -1.5
316,268 + +0.3
316,398 + 15824 mRNA_7456 0.15 -0.1
316,415 + 15824 mRNA_7456 0.19 +0.2
316,555 + 15824 mRNA_7456 0.49 -1.8
316,560 - 15824 mRNA_7456 0.50 +0.0
316,646 - 15824 mRNA_7456 0.69 +0.3
316,685 - 15824 mRNA_7456 0.77 +0.4
316,686 - 15824 mRNA_7456 0.78 +0.8
316,720 - 15824 mRNA_7456 0.85 -0.1
316,839 - -1.1
316,859 + -0.1
316,867 + -1.1
316,907 + +0.4
316,930 + +0.7
316,937 - -1.0
316,944 + +0.4
316,959 + +1.2
316,976 + +1.0
316,979 - +0.2
316,989 + -0.1
316,989 + +0.8
317,003 + -0.4
317,005 - +1.7
317,074 + +1.4
317,191 - -0.9
317,265 + -0.4
317,286 + -0.5
317,286 - -0.3
317,300 + +1.5
317,383 - +0.2
317,405 - -0.5
317,410 + +0.5
317,410 + -1.2
317,430 + +0.4
317,438 + +0.1
317,455 - -0.0
317,466 - +1.2
317,466 + +2.2
317,491 - +0.5
317,521 - -0.2
317,551 - +1.0
317,571 - -0.0
317,608 - +0.8
317,612 + -0.4
317,612 + -0.7
317,615 - +2.3
317,621 + +0.3
317,621 - +1.4
317,621 - +0.8
317,626 + +0.8
317,627 - -1.7
317,628 + -0.5
317,628 + +0.4
317,631 - +1.4
317,633 + +0.7
317,643 - -2.1
317,649 + -1.2
317,651 + -0.0
317,652 + -0.4
317,661 + -0.3
317,670 - +1.0
317,721 - -0.3

Or see this region's nucleotide sequence