Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7468

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15835 and 15836 are separated by 350 nucleotides15836 and 15837 are separated by 193 nucleotides mRNA_7467: 15835 - Hypothetical Protein, at 349,793 to 351,109 15835 mRNA_7468: 15836 - Hypothetical Protein, at 351,460 to 352,308 15836 mRNA_7469: 15837 - K20403 TTI1 TELO2-interacting protein 1, at 352,502 to 356,237 15837

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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350,486 - 15835 mRNA_7467 0.53 -0.9
350,587 - 15835 mRNA_7467 0.60 +2.5
350,617 + 15835 mRNA_7467 0.63 -0.7
350,778 - 15835 mRNA_7467 0.75 +0.4
351,054 + +0.4
351,104 + +0.1
351,199 - +1.5
351,211 + +0.7
351,327 - +1.3
351,476 - +0.5
351,488 + -0.6
351,630 - 15836 mRNA_7468 0.20 -0.8
351,736 + 15836 mRNA_7468 0.33 +0.3
351,781 - 15836 mRNA_7468 0.38 +2.3
351,797 - 15836 mRNA_7468 0.40 +1.3
351,913 + 15836 mRNA_7468 0.53 -1.4
352,028 - 15836 mRNA_7468 0.67 +0.5
352,203 - 15836 mRNA_7468 0.88 +1.1
352,469 - -0.1
352,501 + +0.1

Or see this region's nucleotide sequence