Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7483

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15850 and 15851 are separated by 328 nucleotides mRNA_7482: 15850 - Hypothetical Protein, at 389,619 to 390,464 15850 mRNA_7483: 15851 - HMMPfam-Stress-induced bacterial acidophilic repeat motif-PF10685, at 390,793 to 391,582 15851

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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389,993 + 15850 mRNA_7482 0.44 +0.6
390,137 + 15850 mRNA_7482 0.61 +1.7
390,289 + 15850 mRNA_7482 0.79 -0.7
390,290 - 15850 mRNA_7482 0.79 +1.6
390,407 + +1.0
390,438 - +1.3
390,575 - +1.1
390,586 + +1.3
390,588 + -0.9
391,027 - 15851 mRNA_7483 0.30 +1.7
391,600 + +1.3
391,600 + +1.5
391,736 + -0.8
391,741 + +1.1
391,756 - -0.3
391,761 - +0.0
391,768 + -0.3
391,789 - +0.2
391,865 - -0.4
392,052 + -0.2
392,080 - +1.5
392,182 - +0.3
392,193 - -0.0
392,209 - +2.6
392,356 + +1.3

Or see this region's nucleotide sequence