Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7518

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15885 and 15886 are separated by 140 nucleotides15886 and 15887 are separated by 419 nucleotides mRNA_7517: 15885 - Hypothetical Protein, at 476,971 to 478,237 15885 mRNA_7518: 15886 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 478,378 to 480,820 15886 mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481,240 to 482,191 15887

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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477,471 - 15885 mRNA_7517 0.39 +0.4
478,343 + +0.3
478,383 + +0.7
478,415 + +1.2
478,513 + +1.1
478,518 + -1.0
478,550 - -0.5
478,565 + -0.8
478,572 + -0.7
478,572 + -0.7
478,578 - +0.8
478,582 + -0.0
478,704 + 15886 mRNA_7518 0.13 -0.1
478,714 - 15886 mRNA_7518 0.14 +1.9
478,727 + 15886 mRNA_7518 0.14 +0.2
478,734 + 15886 mRNA_7518 0.15 +1.3
478,742 + 15886 mRNA_7518 0.15 +0.8
478,886 + 15886 mRNA_7518 0.21 +0.2
479,028 + 15886 mRNA_7518 0.27 +0.9
479,290 + 15886 mRNA_7518 0.37 -0.4
479,450 - 15886 mRNA_7518 0.44 +1.6
480,011 - 15886 mRNA_7518 0.67 -0.5
480,191 + 15886 mRNA_7518 0.74 -0.4
480,738 + -0.4
480,907 + -0.4
480,918 - +0.2
481,615 - 15887 mRNA_7519 0.39 +0.9

Or see this region's nucleotide sequence