Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7528

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15895 and 15896 are separated by 819 nucleotides15896 and 15897 are separated by 339 nucleotides mRNA_7527: 15895 - K20031 ZDHHC6 palmitoyltransferase ZDHHC6, at 498,360 to 499,661 15895 mRNA_7528: 15896 - Hypothetical Protein, at 500,481 to 501,182 15896 mRNA_7529: 15897 - Hypothetical Protein, at 501,522 to 502,180 15897

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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499,624 + +0.3
499,757 + -1.6
499,883 + +1.6
499,957 + -0.3
500,922 + 15896 mRNA_7528 0.63 +2.4
501,114 + +0.4
501,235 + -0.2
501,354 - -0.1
501,436 - +1.9
501,549 - +1.9
501,591 - 15897 mRNA_7529 0.10 +0.5
501,686 - 15897 mRNA_7529 0.25 +0.6
501,688 + 15897 mRNA_7529 0.25 -0.4
501,839 + 15897 mRNA_7529 0.48 +0.8
501,845 - 15897 mRNA_7529 0.49 -0.4
501,860 + 15897 mRNA_7529 0.51 -0.5
501,978 - 15897 mRNA_7529 0.69 +0.2
502,072 - 15897 mRNA_7529 0.83 -0.2

Or see this region's nucleotide sequence