Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7529

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15896 and 15897 are separated by 339 nucleotides15897 and 15898 are separated by 677 nucleotides mRNA_7528: 15896 - Hypothetical Protein, at 500,481 to 501,182 15896 mRNA_7529: 15897 - Hypothetical Protein, at 501,522 to 502,180 15897 mRNA_7530: 15898 - Hypothetical Protein, at 502,858 to 503,836 15898

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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500,922 + 15896 mRNA_7528 0.63 +2.4
501,114 + +0.4
501,235 + -0.2
501,354 - -0.1
501,436 - +1.9
501,549 - +1.9
501,591 - 15897 mRNA_7529 0.10 +0.5
501,686 - 15897 mRNA_7529 0.25 +0.6
501,688 + 15897 mRNA_7529 0.25 -0.4
501,839 + 15897 mRNA_7529 0.48 +0.8
501,845 - 15897 mRNA_7529 0.49 -0.4
501,860 + 15897 mRNA_7529 0.51 -0.5
501,978 - 15897 mRNA_7529 0.69 +0.2
502,072 - 15897 mRNA_7529 0.83 -0.2
503,001 - 15898 mRNA_7530 0.15 -0.5
503,033 + 15898 mRNA_7530 0.18 +1.4
503,172 + 15898 mRNA_7530 0.32 -0.6

Or see this region's nucleotide sequence