Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7541

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15908 and 15909 are separated by 218 nucleotides15909 and 15910 are separated by 128 nucleotides mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526 15908 mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524,745 to 525,930 15909 mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526,059 to 527,753 15910

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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524,570 - +0.2
524,574 - +1.4
524,705 - -0.7
524,717 - +1.6
524,720 + +1.5
524,720 + -0.6
524,734 + -3.2
524,742 - -1.6
524,744 - -1.4
524,749 + -0.9
524,751 + -1.7
524,752 + -2.5
524,752 + -1.7
524,858 - -0.1
524,858 - -0.7
524,860 + -1.8
524,860 + -2.2
524,861 + -3.3
524,861 + -2.4
524,861 + -4.0
524,861 + -2.8
524,861 + -2.3
524,861 + -1.3
524,861 + +1.0
524,861 + -2.0
524,861 + -0.5
524,861 + -3.1
524,862 + -2.1
524,862 - -2.2
524,864 + 15909 mRNA_7541 0.10 -4.5
524,864 - 15909 mRNA_7541 0.10 -2.3
524,864 - 15909 mRNA_7541 0.10 -3.0
524,864 - 15909 mRNA_7541 0.10 -4.3
524,864 - 15909 mRNA_7541 0.10 -1.7
524,864 - 15909 mRNA_7541 0.10 -0.8
524,864 - 15909 mRNA_7541 0.10 -1.8
524,867 + 15909 mRNA_7541 0.10 -0.9
524,867 + 15909 mRNA_7541 0.10 -2.5
524,879 - 15909 mRNA_7541 0.11 -3.6
524,894 + 15909 mRNA_7541 0.13 -1.9
524,984 - 15909 mRNA_7541 0.20 -2.7
525,034 - 15909 mRNA_7541 0.24 -2.8
525,039 + 15909 mRNA_7541 0.25 -4.1
525,044 + 15909 mRNA_7541 0.25 -1.3
525,118 + 15909 mRNA_7541 0.31 -3.2
525,147 + 15909 mRNA_7541 0.34 -3.7
525,173 - 15909 mRNA_7541 0.36 +0.5
525,181 - 15909 mRNA_7541 0.37 -2.3
525,186 - 15909 mRNA_7541 0.37 -2.7
525,225 + 15909 mRNA_7541 0.40 -2.0
525,230 + 15909 mRNA_7541 0.41 -0.8
525,266 - 15909 mRNA_7541 0.44 -3.0
525,290 + 15909 mRNA_7541 0.46 -1.9
525,510 - 15909 mRNA_7541 0.65 -1.0
525,584 - 15909 mRNA_7541 0.71 -2.2
525,614 - 15909 mRNA_7541 0.73 -1.0
525,654 - 15909 mRNA_7541 0.77 -0.5
525,670 + 15909 mRNA_7541 0.78 -1.7
525,779 - 15909 mRNA_7541 0.87 -3.4
525,854 - -3.8
525,929 - -3.8
526,365 - 15910 mRNA_7542 0.18 +0.8
526,381 - 15910 mRNA_7542 0.19 +0.7
526,812 + 15910 mRNA_7542 0.44 +0.3

Or see this region's nucleotide sequence