Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7604

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15971 and 15972 are separated by 251 nucleotides15972 and 15973 are separated by 249 nucleotides mRNA_7603: 15971 - SUPERFAMILY--SSF54427, at 660,276 to 661,317 15971 mRNA_7604: 15972 - K09549 PFDN2 prefoldin subunit 2, at 661,569 to 662,288 15972 mRNA_7605: 15973 - K03941 NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, at 662,538 to 663,838 15973

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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660,685 + 15971 mRNA_7603 0.39 +2.7
660,988 - 15971 mRNA_7603 0.68 +1.3
660,998 + 15971 mRNA_7603 0.69 +3.2
661,002 - 15971 mRNA_7603 0.70 +2.0
661,126 - 15971 mRNA_7603 0.82 -2.0
661,129 + 15971 mRNA_7603 0.82 +0.1
661,134 + 15971 mRNA_7603 0.82 -1.1
661,149 - 15971 mRNA_7603 0.84 +1.4
661,160 - 15971 mRNA_7603 0.85 +0.1
661,291 - +1.3
661,315 + -0.0
661,574 - +0.1
661,614 + -1.2
662,161 - 15972 mRNA_7604 0.82 -0.5
662,288 - +0.1
662,307 - +0.2
662,309 + +0.2
662,323 + -0.6
662,325 - +1.0
662,332 + -0.2
662,440 - +1.1
662,446 + +0.8
662,453 - +0.1
662,458 - -0.4
662,460 + +2.3
662,463 + +0.1
662,479 + +0.3
662,483 + +2.4

Or see this region's nucleotide sequence