Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7610

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15977 and 15978 are separated by 353 nucleotides15978 and 15979 are separated by 361 nucleotides mRNA_7609: 15977 - KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1), at 667,919 to 668,964 15977 mRNA_7610: 15978 - KOG0548 Molecular co-chaperone STI1, at 669,318 to 671,371 15978 mRNA_7611: 15979 - KOG4779 Predicted membrane protein, at 671,733 to 672,150 15979

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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668,433 - 15977 mRNA_7609 0.49 +2.3
668,859 + 15977 mRNA_7609 0.90 +0.6
668,982 + +0.9
668,989 + -0.2
668,995 - +0.6
669,007 + +0.1
669,018 + -1.4
669,153 + +0.4
669,154 + -0.5
669,159 - +0.3
669,583 - 15978 mRNA_7610 0.13 -2.2
669,592 + 15978 mRNA_7610 0.13 -1.1
669,872 + 15978 mRNA_7610 0.27 -0.7
670,092 + 15978 mRNA_7610 0.38 +0.4
670,307 - 15978 mRNA_7610 0.48 +0.9
670,443 + 15978 mRNA_7610 0.55 +1.3
670,451 + 15978 mRNA_7610 0.55 +0.3
672,336 + +0.3
672,338 + -1.0
672,342 + +0.5

Or see this region's nucleotide sequence