Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7614

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15981 and 15982 are separated by 478 nucleotides15982 and 15983 are separated by 303 nucleotides mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674,825 to 677,007 15981 mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677,486 to 680,218 15982 mRNA_7615: 15983 - K06678 YCG1, CAPG condensin complex subunit 3, at 680,522 to 684,221 15983

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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676,678 - 15981 mRNA_7613 0.85 -0.3
676,693 + 15981 mRNA_7613 0.86 -0.2
676,843 + +0.2
677,142 + -1.1
677,155 - -0.4
677,170 - -0.9
677,409 - +3.1
677,410 - -0.8
677,431 + -0.7
677,545 - +1.6
677,563 + +0.6
677,568 - -0.2
677,570 + +2.7
677,573 + -0.5
677,608 - -1.2
677,708 - -1.3
677,750 + +0.9
677,834 + 15982 mRNA_7614 0.13 -0.4
677,861 + 15982 mRNA_7614 0.14 -0.6
677,870 - 15982 mRNA_7614 0.14 +1.7
677,960 + 15982 mRNA_7614 0.17 -2.6
678,021 - 15982 mRNA_7614 0.20 +0.8
678,023 + 15982 mRNA_7614 0.20 +0.4
678,296 - 15982 mRNA_7614 0.30 +1.8
678,433 + 15982 mRNA_7614 0.35 +0.9
678,450 - 15982 mRNA_7614 0.35 +1.7
678,458 + 15982 mRNA_7614 0.36 -0.2
678,595 - 15982 mRNA_7614 0.41 +0.9
678,629 + 15982 mRNA_7614 0.42 +0.1
678,978 - 15982 mRNA_7614 0.55 -1.0
679,251 + 15982 mRNA_7614 0.65 +0.1
679,387 + 15982 mRNA_7614 0.70 -0.2
679,564 - 15982 mRNA_7614 0.76 +1.2
679,564 - 15982 mRNA_7614 0.76 -1.4
679,792 + 15982 mRNA_7614 0.84 +0.3
679,969 + -0.4
679,975 - +1.3
679,992 + -0.6
680,228 - -0.3
680,250 - +0.4
680,251 + -0.2
680,255 + +0.7
680,289 - -0.7
680,289 - +0.5
680,289 + +1.7
680,290 + +0.4
680,295 - +0.7
680,299 - +0.6
680,305 + +0.2
680,305 + +0.5
680,324 + +0.7
680,450 + -0.6

Or see this region's nucleotide sequence