Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7729

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16096 and 16097 are separated by 867 nucleotides16097 and 16098 are separated by 692 nucleotides mRNA_7728: 16096 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 942,668 to 943,581 16096 mRNA_7729: 16097 - KOG0537 Cytochrome b5, at 944,449 to 944,897 16097 mRNA_7730: 16098 - Hypothetical Protein, at 945,590 to 946,257 16098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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943,499 + +0.7
943,527 + +0.9
943,630 + +1.1
943,769 - +1.8
943,778 - +0.4
943,910 + +0.3
943,926 - +0.7
943,942 - +1.9
943,947 - -0.3
943,959 - +0.9
944,077 - +1.1
944,077 - +0.5
944,081 + -0.5
944,081 + +0.2
944,081 + +0.0
944,097 - +0.8
944,098 + -0.6
944,101 + +0.1
944,134 + -0.2
944,198 - +0.9
945,382 - +0.3
945,728 - 16098 mRNA_7730 0.21 +0.8

Or see this region's nucleotide sequence