Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7744

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16111 and 16112 are separated by 285 nucleotides mRNA_7743: 16111 - K09569 FKBP2 FK506-binding protein 2, at 971,811 to 972,530 16111 mRNA_7744: 16112 - Hypothetical Protein, at 972,816 to 973,446 16112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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971,968 - 16111 mRNA_7743 0.22 +0.2
972,001 + 16111 mRNA_7743 0.26 +1.0
972,094 - 16111 mRNA_7743 0.39 +1.9
972,200 - 16111 mRNA_7743 0.54 +1.2
972,201 + 16111 mRNA_7743 0.54 -0.4
972,262 + 16111 mRNA_7743 0.63 +1.4
972,370 + 16111 mRNA_7743 0.78 +2.0
972,380 - 16111 mRNA_7743 0.79 +0.5
972,385 + 16111 mRNA_7743 0.80 +2.3
972,401 + 16111 mRNA_7743 0.82 +3.1
972,443 + 16111 mRNA_7743 0.88 -0.5
972,513 + -1.5
972,656 - +2.0
972,791 - +0.6
972,802 + +0.4
973,086 - 16112 mRNA_7744 0.43 +0.7
973,375 + 16112 mRNA_7744 0.89 +1.9
973,447 - -1.5
973,485 - -0.5
973,532 - -1.1
973,664 - -0.3
973,665 - -1.2
973,809 + +0.3
973,939 + +2.3
974,109 - +0.2
974,111 + -0.0
974,114 - -1.1
974,119 - -1.4
974,122 + +1.0
974,125 - +2.2
974,127 + +2.0
974,127 + -0.3
974,128 + +0.5
974,128 + +1.2
974,153 + -0.2
974,249 - -0.7
974,249 - +0.3
974,252 - +0.4
974,268 - -0.6
974,269 + -0.3

Or see this region's nucleotide sequence