Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7748

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16115 and 16116 are separated by 178 nucleotides mRNA_7747: 16115 - Hypothetical Protein, at 976,753 to 979,650 16115 mRNA_7748: 16116 - Hypothetical Protein, at 979,829 to 980,468 16116

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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979,434 - +0.5
979,595 - -0.1
979,660 + -0.4
979,949 - 16116 mRNA_7748 0.19 -0.1
979,953 - 16116 mRNA_7748 0.19 -1.1
980,207 - 16116 mRNA_7748 0.59 +0.7
980,308 + 16116 mRNA_7748 0.75 +0.3
980,310 + 16116 mRNA_7748 0.75 +1.0
980,347 - 16116 mRNA_7748 0.81 +0.4
980,376 + 16116 mRNA_7748 0.85 -0.6
980,670 + -0.1
980,794 - +0.1
980,908 + +2.2
981,051 + +0.1
981,218 + -0.2
981,222 + -0.0
981,224 + -0.0
981,224 + -1.1
981,370 + +0.1

Or see this region's nucleotide sequence