Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7799

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16166 and 16167 overlap by 2 nucleotides16167 and 16168 are separated by 457 nucleotides mRNA_7798: 16166 - Hypothetical Protein, at 1,090,877 to 1,091,572 16166 mRNA_7799: 16167 - KOG1738 Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like, at 1,091,571 to 1,096,193 16167 mRNA_7800: 16168 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,096,651 to 1,099,129 16168

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
1,090,571 + -0.5
1,090,696 - -0.9
1,091,020 + 16166 mRNA_7798 0.21 -0.2
1,091,221 - 16166 mRNA_7798 0.49 -0.3
1,091,271 - 16166 mRNA_7798 0.57 +0.4
1,091,272 + 16166 mRNA_7798 0.57 -0.5
1,091,285 + 16166 mRNA_7798 0.59 +0.9
1,091,286 - 16166 mRNA_7798 0.59 -0.3
1,091,289 + 16166 mRNA_7798 0.59 +2.4
1,091,292 - 16166 mRNA_7798 0.60 +1.7
1,091,293 + 16166 mRNA_7798 0.60 -0.4
1,091,298 - 16166 mRNA_7798 0.60 +0.1
1,091,301 - 16166 mRNA_7798 0.61 +1.0
1,091,323 + 16166 mRNA_7798 0.64 +1.7
1,091,444 - 16166 mRNA_7798 0.81 -1.2
1,091,478 - 16166 mRNA_7798 0.86 +1.0
1,091,582 - +0.9
1,091,746 - +1.6
1,091,760 + -0.2
1,092,063 + 16167 mRNA_7799 0.11 +1.5
1,092,514 + 16167 mRNA_7799 0.20 +2.3
1,092,772 + 16167 mRNA_7799 0.26 +1.5
1,092,893 + 16167 mRNA_7799 0.29 -1.3
1,092,921 - 16167 mRNA_7799 0.29 +0.8
1,093,181 - 16167 mRNA_7799 0.35 -0.9
1,093,493 + 16167 mRNA_7799 0.42 +2.2
1,093,505 - 16167 mRNA_7799 0.42 +0.9
1,093,523 + 16167 mRNA_7799 0.42 -0.2
1,093,542 + 16167 mRNA_7799 0.43 +2.3
1,093,552 - 16167 mRNA_7799 0.43 +1.5
1,093,642 - 16167 mRNA_7799 0.45 -2.0
1,093,942 - 16167 mRNA_7799 0.51 +0.2
1,094,118 + 16167 mRNA_7799 0.55 +0.4
1,094,444 + 16167 mRNA_7799 0.62 +0.1
1,094,447 - 16167 mRNA_7799 0.62 +0.2
1,094,666 - 16167 mRNA_7799 0.67 +1.4
1,094,711 + 16167 mRNA_7799 0.68 -1.0
1,094,714 - 16167 mRNA_7799 0.68 +0.9
1,094,723 - 16167 mRNA_7799 0.68 +0.9
1,094,893 + 16167 mRNA_7799 0.72 +0.4
1,095,085 + 16167 mRNA_7799 0.76 +0.3
1,095,646 - 16167 mRNA_7799 0.88 -1.7
1,096,267 - -0.1
1,096,329 - +0.1
1,096,349 + +0.5
1,096,356 + +0.1
1,096,465 + -0.8
1,096,519 + +0.3
1,096,825 + -0.4
1,096,918 - 16168 mRNA_7800 0.11 +0.3
1,096,919 - 16168 mRNA_7800 0.11 -0.7
1,096,922 + 16168 mRNA_7800 0.11 -0.3
1,096,949 - 16168 mRNA_7800 0.12 -1.2
1,096,973 + 16168 mRNA_7800 0.13 +0.0

Or see this region's nucleotide sequence