Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7807

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16174 and 16175 are separated by 452 nucleotides16175 and 16176 are separated by 212 nucleotides mRNA_7806: 16174 - Hypothetical Protein, at 1,115,383 to 1,115,856 16174 mRNA_7807: 16175 - K01304 pcp pyroglutamyl-peptidase, at 1,116,309 to 1,117,210 16175 mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1,117,423 to 1,121,551 16176

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,115,451 - 16174 mRNA_7806 0.14 -0.2
1,115,471 - 16174 mRNA_7806 0.19 -0.2
1,115,745 + 16174 mRNA_7806 0.76 -0.5
1,115,773 + 16174 mRNA_7806 0.82 -1.3
1,115,908 - -1.4
1,115,930 - +0.1
1,116,462 - 16175 mRNA_7807 0.17 +0.2
1,116,512 - 16175 mRNA_7807 0.23 -0.2
1,116,686 - 16175 mRNA_7807 0.42 -0.0
1,116,847 + 16175 mRNA_7807 0.60 -0.8
1,117,090 + 16175 mRNA_7807 0.87 +1.6
1,117,132 + +0.2
1,117,237 - -0.0
1,117,248 + -0.6
1,117,251 - +1.9
1,117,272 + -0.2
1,117,273 + +0.1
1,117,277 + -0.6
1,117,413 - +0.2

Or see this region's nucleotide sequence