Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7808

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16175 and 16176 are separated by 212 nucleotides16176 and 16177 are separated by 382 nucleotides mRNA_7807: 16175 - K01304 pcp pyroglutamyl-peptidase, at 1,116,309 to 1,117,210 16175 mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1,117,423 to 1,121,551 16176 mRNA_7809: 16177 - Hypothetical Protein, at 1,121,934 to 1,122,810 16177

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,116,462 - 16175 mRNA_7807 0.17 +0.2
1,116,512 - 16175 mRNA_7807 0.23 -0.2
1,116,686 - 16175 mRNA_7807 0.42 -0.0
1,116,847 + 16175 mRNA_7807 0.60 -0.8
1,117,090 + 16175 mRNA_7807 0.87 +1.6
1,117,132 + +0.2
1,117,237 - -0.0
1,117,248 + -0.6
1,117,251 - +1.9
1,117,272 + -0.2
1,117,273 + +0.1
1,117,277 + -0.6
1,117,413 - +0.2
1,118,287 - 16176 mRNA_7808 0.21 +0.2
1,118,565 + 16176 mRNA_7808 0.28 -1.0
1,118,589 + 16176 mRNA_7808 0.28 -0.7
1,120,317 - 16176 mRNA_7808 0.70 -3.3
1,121,241 + -0.8
1,121,394 + +0.1
1,121,413 - +0.2
1,121,556 + -1.8
1,121,578 - -0.3
1,121,594 + +0.0
1,121,720 - -1.1
1,121,725 + +0.3
1,121,737 - -0.6
1,121,854 + -0.5
1,121,981 - +0.0
1,122,170 - 16177 mRNA_7809 0.27 -0.6
1,122,171 + 16177 mRNA_7809 0.27 +0.1
1,122,200 + 16177 mRNA_7809 0.30 +0.3
1,122,262 - 16177 mRNA_7809 0.37 +0.6
1,122,265 - 16177 mRNA_7809 0.38 +0.2
1,122,280 - 16177 mRNA_7809 0.39 +0.4
1,122,299 + 16177 mRNA_7809 0.42 +0.4
1,122,310 - 16177 mRNA_7809 0.43 +0.8
1,122,315 + 16177 mRNA_7809 0.43 +1.2
1,122,323 + 16177 mRNA_7809 0.44 -1.0
1,122,349 - 16177 mRNA_7809 0.47 +0.1
1,122,368 - 16177 mRNA_7809 0.49 -0.2
1,122,377 + 16177 mRNA_7809 0.51 +1.4
1,122,392 + 16177 mRNA_7809 0.52 +1.4
1,122,402 + 16177 mRNA_7809 0.53 +0.8
1,122,418 + 16177 mRNA_7809 0.55 -0.8
1,122,418 - 16177 mRNA_7809 0.55 +1.8
1,122,420 - 16177 mRNA_7809 0.55 +1.0
1,122,429 - 16177 mRNA_7809 0.56 +0.3
1,122,443 + 16177 mRNA_7809 0.58 +0.2
1,122,444 - 16177 mRNA_7809 0.58 -0.9
1,122,449 + 16177 mRNA_7809 0.59 +1.5
1,122,453 - 16177 mRNA_7809 0.59 -0.3
1,122,460 + 16177 mRNA_7809 0.60 -0.8
1,122,460 + 16177 mRNA_7809 0.60 +0.6
1,122,487 - 16177 mRNA_7809 0.63 +0.3
1,122,508 - 16177 mRNA_7809 0.65 +0.3
1,122,510 - 16177 mRNA_7809 0.66 +0.2
1,122,527 - 16177 mRNA_7809 0.68 +0.6
1,122,530 - 16177 mRNA_7809 0.68 +0.8
1,122,532 + 16177 mRNA_7809 0.68 +0.2
1,122,535 + 16177 mRNA_7809 0.69 +0.1
1,122,545 + 16177 mRNA_7809 0.70 -0.0

Or see this region's nucleotide sequence