Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7877

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16244 and 16245 are separated by 308 nucleotides16245 and 16246 are separated by 221 nucleotides mRNA_7876: 16244 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,278,407 to 1,280,463 16244 mRNA_7877: 16245 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1,280,772 to 1,282,226 16245 mRNA_7878: 16246 - K14400 PCF11 pre-mRNA cleavage complex 2 protein Pcf11, at 1,282,448 to 1,285,814 16246

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
1,279,909 - 16244 mRNA_7876 0.73 +0.0
1,279,968 - 16244 mRNA_7876 0.76 -0.5
1,280,163 - 16244 mRNA_7876 0.85 +0.4
1,280,381 + -0.1
1,280,577 + -1.9
1,280,589 + +0.8
1,280,662 + -0.0
1,280,677 - -0.5
1,280,691 - -1.2
1,280,983 + 16245 mRNA_7877 0.15 +0.1
1,281,005 - 16245 mRNA_7877 0.16 +1.7
1,281,095 + 16245 mRNA_7877 0.22 +2.1
1,281,152 + 16245 mRNA_7877 0.26 +1.7
1,281,187 - 16245 mRNA_7877 0.29 -0.1
1,281,315 + 16245 mRNA_7877 0.37 -1.4
1,281,414 - 16245 mRNA_7877 0.44 +0.0
1,281,763 + 16245 mRNA_7877 0.68 +0.4
1,281,899 + 16245 mRNA_7877 0.77 -0.8
1,282,044 - 16245 mRNA_7877 0.87 +0.8
1,282,083 - -1.1
1,282,178 + +0.9
1,282,187 + +1.3
1,282,220 + +1.5
1,282,239 - +1.1
1,282,487 + -0.6
1,282,784 + -0.5

Or see this region's nucleotide sequence