Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7923

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16290 and 16291 are separated by 509 nucleotides mRNA_7922: 16290 - K17065 DNM1L dynamin 1-like protein, at 27,039 to 30,180 16290 mRNA_7923: 16291 - Hypothetical Protein, at 30,690 to 33,001 16291

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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29,952 - -1.0
30,041 + -0.1
30,157 - +0.8
30,188 - +0.9
30,218 + -0.2
30,640 + -0.3
30,643 - +1.4
30,662 - +0.8
30,680 + +0.3
30,800 + +0.7
30,812 - +0.3
30,813 + +0.1
30,954 + 16291 mRNA_7923 0.11 +0.5
30,962 + 16291 mRNA_7923 0.12 -0.1
31,047 - 16291 mRNA_7923 0.15 -1.6
31,062 - 16291 mRNA_7923 0.16 +0.4
31,064 - 16291 mRNA_7923 0.16 +0.5
31,065 + 16291 mRNA_7923 0.16 -0.1
31,068 + 16291 mRNA_7923 0.16 +1.9
31,068 - 16291 mRNA_7923 0.16 -0.8
31,072 + 16291 mRNA_7923 0.17 +1.4
31,084 + 16291 mRNA_7923 0.17 +0.3
31,143 - 16291 mRNA_7923 0.20 +2.9
31,150 + 16291 mRNA_7923 0.20 +0.4
31,254 - 16291 mRNA_7923 0.24 +0.1
31,276 - 16291 mRNA_7923 0.25 +1.1
31,285 - 16291 mRNA_7923 0.26 +0.0
31,299 + 16291 mRNA_7923 0.26 +0.7
31,358 + 16291 mRNA_7923 0.29 +2.3
31,361 - 16291 mRNA_7923 0.29 +1.4
31,388 - 16291 mRNA_7923 0.30 +0.6
31,414 + 16291 mRNA_7923 0.31 +1.0
31,428 - 16291 mRNA_7923 0.32 -0.0
31,442 - 16291 mRNA_7923 0.33 +0.1
31,446 + 16291 mRNA_7923 0.33 -0.4
31,449 - 16291 mRNA_7923 0.33 +1.9
31,449 - 16291 mRNA_7923 0.33 +3.8
31,449 - 16291 mRNA_7923 0.33 +2.0
31,449 - 16291 mRNA_7923 0.33 +0.3
31,449 - 16291 mRNA_7923 0.33 +0.1
31,449 - 16291 mRNA_7923 0.33 +0.1
31,455 + 16291 mRNA_7923 0.33 +1.4
31,456 + 16291 mRNA_7923 0.33 +0.1
31,459 + 16291 mRNA_7923 0.33 +0.3
31,674 + 16291 mRNA_7923 0.43 +2.2
31,709 + 16291 mRNA_7923 0.44 +0.6
31,865 - 16291 mRNA_7923 0.51 +0.7
31,887 - 16291 mRNA_7923 0.52 +1.2
31,994 - 16291 mRNA_7923 0.56 +1.0
32,030 + 16291 mRNA_7923 0.58 -1.6
32,155 - 16291 mRNA_7923 0.63 +0.2
32,279 - 16291 mRNA_7923 0.69 +0.1
32,286 + 16291 mRNA_7923 0.69 +0.8
32,322 + 16291 mRNA_7923 0.71 +0.8
32,382 + 16291 mRNA_7923 0.73 +1.3
32,859 + -0.1
32,920 - +0.1
32,920 + -0.1
33,468 + +0.6
33,656 + -2.6
33,737 - +0.0
33,741 + +0.7
33,894 + +1.6

Or see this region's nucleotide sequence