Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7936

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16303 and 16304 are separated by 383 nucleotides16304 and 16305 are separated by 456 nucleotides mRNA_7935: 16303 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 51,510 to 51,923 16303 mRNA_7936: 16304 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 52,307 to 53,072 16304 mRNA_7937: 16305 - KOG0550 Molecular chaperone (DnaJ superfamily), at 53,529 to 55,424 16305

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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51,427 + +1.2
51,446 + +0.5
51,818 + 16303 mRNA_7935 0.74 -0.4
52,125 - +2.3
52,135 + +1.3
52,241 + -0.2
52,407 - 16304 mRNA_7936 0.13 -0.1
52,456 + 16304 mRNA_7936 0.19 +2.1
52,686 - 16304 mRNA_7936 0.49 +0.2
52,797 - 16304 mRNA_7936 0.64 +0.3
52,826 + 16304 mRNA_7936 0.68 -0.6
52,975 + 16304 mRNA_7936 0.87 -0.0
53,084 - +1.8
53,089 + -0.6
53,095 + +0.4
53,121 - +0.8
53,127 + +0.8
53,134 - -1.3
53,135 + -1.7
53,138 - +0.1
53,176 + -0.4
53,177 - +0.5
53,189 - +0.0
53,199 + -0.0
53,202 + -0.1
53,219 + +0.8
53,460 - +2.0
53,847 + 16305 mRNA_7937 0.17 +0.1
54,045 + 16305 mRNA_7937 0.27 -0.2

Or see this region's nucleotide sequence