Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8009

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16376 and 16377 are separated by 469 nucleotides16377 and 16378 are separated by 577 nucleotides mRNA_8008: 16376 - BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio..., at 202,632 to 203,729 16376 mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713 16377 mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434 16378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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203,342 + 16376 mRNA_8008 0.65 +1.4
205,797 - +0.1
205,808 - +1.0
205,821 - -0.3
205,965 - +1.5
205,969 + +0.5
205,970 + +1.7
205,984 + -2.2
205,999 - +1.9
206,007 + +0.8
206,009 + +1.0
206,087 - +0.3
206,106 - +0.4
206,125 - -0.8
206,172 + +0.3
206,175 - +0.8

Or see this region's nucleotide sequence