Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8010

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16377 and 16378 are separated by 577 nucleotides16378 and 16379 are separated by 384 nucleotides mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713 16377 mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967 16379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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205,797 - +0.1
205,808 - +1.0
205,821 - -0.3
205,965 - +1.5
205,969 + +0.5
205,970 + +1.7
205,984 + -2.2
205,999 - +1.9
206,007 + +0.8
206,009 + +1.0
206,087 - +0.3
206,106 - +0.4
206,125 - -0.8
206,172 + +0.3
206,175 - +0.8
207,025 + 16378 mRNA_8010 0.64 +0.5
207,296 - 16378 mRNA_8010 0.88 +1.1
207,492 - +1.1
207,505 + +0.5
207,506 + -1.1
207,645 - +0.2
207,651 + -0.1
208,100 - 16379 mRNA_8011 0.24 +2.2

Or see this region's nucleotide sequence