Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8014

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16381 and 16382 are separated by 312 nucleotides16382 and 16383 are separated by 301 nucleotides mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212,070 to 213,325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213,638 to 214,851 16382 mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215,153 to 216,105 16383

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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212,750 - 16381 mRNA_8013 0.54 +0.8
213,429 - -0.4
213,537 - +0.6
213,573 - +0.1
213,580 - +1.7
213,585 + -0.6
213,636 - -1.9
213,643 - +1.5
213,649 - +1.4
213,651 + -0.0
213,651 + +1.0
213,757 - +2.0
213,766 + 16382 mRNA_8014 0.11 +2.3
213,777 - 16382 mRNA_8014 0.11 +1.4
213,780 - 16382 mRNA_8014 0.12 -1.3
213,785 - 16382 mRNA_8014 0.12 +0.2
213,786 + 16382 mRNA_8014 0.12 +1.6
213,798 - 16382 mRNA_8014 0.13 -1.4
213,804 - 16382 mRNA_8014 0.14 +0.9
213,934 + 16382 mRNA_8014 0.24 +1.3
214,101 + 16382 mRNA_8014 0.38 +0.2
214,105 + 16382 mRNA_8014 0.38 +0.4
214,354 - 16382 mRNA_8014 0.59 -0.2
214,533 - 16382 mRNA_8014 0.74 +0.5
214,791 - +0.3
214,796 + +1.4
214,944 + -0.7
215,235 - +1.8
215,263 - 16383 mRNA_8015 0.12 +1.0
215,308 - 16383 mRNA_8015 0.16 +0.7
215,312 - 16383 mRNA_8015 0.17 +0.4
215,491 + 16383 mRNA_8015 0.35 +1.0
215,519 - 16383 mRNA_8015 0.38 -1.3
215,539 + 16383 mRNA_8015 0.41 +0.8
215,540 - 16383 mRNA_8015 0.41 +1.2
215,548 - 16383 mRNA_8015 0.41 -1.1
215,548 + 16383 mRNA_8015 0.41 +2.4
215,558 + 16383 mRNA_8015 0.42 -0.1
215,582 + 16383 mRNA_8015 0.45 -0.3
215,598 - 16383 mRNA_8015 0.47 -0.2
215,620 - 16383 mRNA_8015 0.49 -0.2
215,661 + 16383 mRNA_8015 0.53 +0.2
215,667 - 16383 mRNA_8015 0.54 +0.6
215,671 - 16383 mRNA_8015 0.54 +0.3
215,686 + 16383 mRNA_8015 0.56 +2.1
215,692 + 16383 mRNA_8015 0.57 -1.0
215,834 - 16383 mRNA_8015 0.71 +0.5

Or see this region's nucleotide sequence