Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8048

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16415 and 16416 are separated by 642 nucleotides16416 and 16417 are separated by 700 nucleotides mRNA_8047: 16415 - K08744 CRLS cardiolipin synthase (CMP-forming), at 297,663 to 298,822 16415 mRNA_8048: 16416 - Hypothetical Protein, at 299,465 to 299,980 16416 mRNA_8049: 16417 - SUPERFAMILY--SSF52047, at 300,681 to 303,799 16417

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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299,066 + +1.5
299,088 + -0.5
299,090 + -0.3
299,096 + -0.1
299,403 + -1.2
299,426 + +1.3
299,523 - 16416 mRNA_8048 0.11 +0.1
299,523 - 16416 mRNA_8048 0.11 -1.1
299,543 + 16416 mRNA_8048 0.15 -0.1
299,545 - 16416 mRNA_8048 0.16 -1.7
299,577 - 16416 mRNA_8048 0.22 -1.1
299,950 - +0.3
300,232 - -0.3
300,348 - +0.3
300,564 - -0.6

Or see this region's nucleotide sequence