Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8058

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16425 and 16426 are separated by 22 nucleotides16426 and 16427 are separated by 580 nucleotides mRNA_8057: 16425 - K08866 TTK, MPS1 serine/threonine-protein kinase TTK/MPS1, at 319,641 to 320,716 16425 mRNA_8058: 16426 - Hypothetical Protein, at 320,739 to 323,524 16426 mRNA_8059: 16427 - HMMPfam-Translation initiation factor IF-3, C-terminal domain-PF00707,HMMPfam-Translation initiation factor IF-3, N-terminal domain-PF05198,SUPERFAMILY--SSF54364,SUPERFAMILY--SSF55200, at 324,105 to 324,902 16427

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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320,997 + -2.0
323,614 - -0.9
323,627 + -0.7
323,745 - +1.3
323,745 - +0.1
323,746 + +1.5
323,764 + +1.7
323,778 + +1.3
323,888 - +0.6

Or see this region's nucleotide sequence