Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8113

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16480 and 16481 are separated by 521 nucleotides16481 and 16482 are separated by 355 nucleotides mRNA_8112: 16480 - K14772 UTP20 U3 small nucleolar RNA-associated protein 20, at 440,732 to 449,683 16480 mRNA_8113: 16481 - HMMPfam-Thioesterase-like superfamily-PF13279,SUPERFAMILY--SSF54637, at 450,205 to 451,053 16481 mRNA_8114: 16482 - K09648 IMP2 mitochondrial inner membrane protease subunit 2, at 451,409 to 451,898 16482

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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449,891 + +1.0
449,891 + +0.9
449,894 + +0.2
449,916 + +0.3
449,922 - +0.6
450,032 - -2.1
450,035 - +0.9
450,040 - +0.5
450,042 + +1.6
450,049 + -0.3
450,054 - -0.8
450,060 + +3.1
450,064 - -1.3
450,069 + -0.8
450,071 - +2.5
450,075 - -0.6
450,076 + +2.2
450,077 + +0.4
450,089 + +1.3
450,192 - +1.5
450,212 + +1.3
450,217 + +1.7
450,222 + +1.5
450,233 + +1.4
450,370 - 16481 mRNA_8113 0.19 +0.2
450,383 + 16481 mRNA_8113 0.21 +1.3
450,392 - 16481 mRNA_8113 0.22 +0.6
450,394 + 16481 mRNA_8113 0.22 +1.9
450,826 + 16481 mRNA_8113 0.73 -0.1
450,915 - 16481 mRNA_8113 0.84 -0.2

Or see this region's nucleotide sequence