Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8128

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16495 and 16496 are separated by 340 nucleotides16496 and 16497 are separated by 484 nucleotides mRNA_8127: 16495 - BLAST CigA protein-like protein [Phycomyces blakesleean..., at 482,813 to 485,416 16495 mRNA_8128: 16496 - KOG0526 Nucleosome-binding factor SPN, POB3 subunit, at 485,757 to 486,942 16496 mRNA_8129: 16497 - KOG0543 FKBP-type peptidyl-prolyl cis-trans isomerase, at 487,427 to 488,552 16497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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484,891 + 16495 mRNA_8127 0.80 +0.5
484,909 + 16495 mRNA_8127 0.80 -1.6
485,034 - 16495 mRNA_8127 0.85 +1.8
485,328 - +1.9
485,332 - -0.2
485,334 - +1.4
485,469 - +2.0
485,499 - +0.2
485,501 + +2.9
485,503 - +0.5
485,568 + +0.4
485,601 + -0.9
485,672 + +0.0
485,707 + +0.8
486,870 - -1.0
486,873 + -0.0
487,134 + +0.1
487,246 - -1.1
487,890 - 16497 mRNA_8129 0.41 -0.2

Or see this region's nucleotide sequence