Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8214

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16581 and 16582 are separated by 225 nucleotides16582 and 16583 are separated by 481 nucleotides mRNA_8213: 16581 - KOG1590 Uncharacterized conserved protein, at 682,134 to 683,094 16581 mRNA_8214: 16582 - BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R..., at 683,320 to 684,168 16582 mRNA_8215: 16583 - ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 684,650 to 685,960 16583

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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683,114 + +0.2
683,270 - +0.3
683,977 + 16582 mRNA_8214 0.77 -0.5
684,101 + -0.8
684,114 - -2.1
684,135 - +0.8
684,262 + +0.6
684,297 + -0.5
684,419 + -0.0
684,434 - -1.2
684,715 + -0.9
684,962 + 16583 mRNA_8215 0.24 +0.9
685,131 - 16583 mRNA_8215 0.37 +1.3

Or see this region's nucleotide sequence