Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8277

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16644 and 16645 are separated by 153 nucleotides16645 and 16646 are separated by 261 nucleotides mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822,982 to 824,358 16644 mRNA_8277: 16645 - Hypothetical Protein, at 824,512 to 825,100 16645 mRNA_8278: 16646 - K16330 K16330 pseudouridylate synthase / pseudouridine kinase, at 825,362 to 828,181 16646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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823,530 - 16644 mRNA_8276 0.40 -0.9
823,562 + 16644 mRNA_8276 0.42 -0.6
823,727 + 16644 mRNA_8276 0.54 -1.3
823,731 - 16644 mRNA_8276 0.54 -0.5
823,828 - 16644 mRNA_8276 0.61 -1.0
823,884 + 16644 mRNA_8276 0.66 -0.2
823,946 + 16644 mRNA_8276 0.70 +0.9
823,997 + 16644 mRNA_8276 0.74 -1.0
824,003 - 16644 mRNA_8276 0.74 -0.9
824,027 + 16644 mRNA_8276 0.76 -1.1
824,033 + 16644 mRNA_8276 0.76 -0.5
824,105 + 16644 mRNA_8276 0.82 -1.1
824,136 + 16644 mRNA_8276 0.84 -0.7
824,305 + +0.5
824,310 - -0.6
824,563 - -2.1
824,719 - 16645 mRNA_8277 0.35 +1.4
824,741 - 16645 mRNA_8277 0.39 -2.7
824,883 + 16645 mRNA_8277 0.63 -0.7
825,269 - +1.8
825,281 - +1.4
825,609 + +0.2

Or see this region's nucleotide sequence