Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8286

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16653 and 16654 are separated by 469 nucleotides16654 and 16655 are separated by 862 nucleotides mRNA_8285: 16653 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 841,143 to 845,451 16653 mRNA_8286: 16654 - HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716, at 845,921 to 849,990 16654 mRNA_8287: 16655 - K10245 ELO2 fatty acid elongase 2, at 850,853 to 852,932 16655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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845,670 - -0.4
846,068 + +1.1
846,533 - 16654 mRNA_8286 0.15 +0.1
847,157 - 16654 mRNA_8286 0.30 +0.7
848,014 + 16654 mRNA_8286 0.51 +1.0
848,460 + 16654 mRNA_8286 0.62 -0.9
849,487 + 16654 mRNA_8286 0.88 +0.5
849,487 + 16654 mRNA_8286 0.88 +0.7
850,218 - -0.7
850,244 - -0.6
850,246 - +0.8
850,373 - +0.0
850,373 - +0.4
850,387 + -0.0
850,387 - -0.2
850,389 + +0.9
850,391 + +0.9
850,392 - -1.0
850,402 + +0.8
850,403 + +0.5
850,405 + +0.2
850,406 - -0.3
850,407 + +0.0
850,412 + -0.3
850,414 + -0.2
850,414 + +0.5
850,419 - +0.7
850,419 - +1.5
850,420 + +1.7
850,420 + +0.8
850,422 - -0.5
850,424 + -1.6
850,440 + +0.4
850,456 + +1.8
850,497 + -0.9
850,497 - +0.1
850,510 + -0.6
850,510 + +0.0
850,522 + -0.7
850,525 - +0.2
850,527 + +0.0
850,530 + +1.5
850,531 - -0.3
850,539 - +1.4
850,676 - -0.1
850,686 - +0.1
850,793 - +1.2

Or see this region's nucleotide sequence