Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8313

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16680 and 16681 are separated by 222 nucleotides16681 and 16682 are separated by 933 nucleotides mRNA_8312: 16680 - K17868 DPH7, RRT2 diphthine methyl ester acylhydrolase, at 907,678 to 909,336 16680 mRNA_8313: 16681 - K11541 URA2 carbamoyl-phosphate synthase / aspartate carbamoyltransferase, at 909,559 to 916,766 16681 mRNA_8314: 16682 - K03321 TC.SULP sulfate permease, SulP family, at 917,700 to 921,050 16682

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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908,945 + 16680 mRNA_8312 0.76 -0.8
909,264 + +0.4
909,269 - +0.1
909,297 - +0.4
909,329 + -0.5
916,992 - -0.2
916,998 + -1.1
917,000 + -0.7
917,014 + +0.4
917,141 + -0.5
917,143 - +0.8
917,147 - -1.5
917,159 + -1.6
917,169 + +0.4
917,171 + -0.7
917,198 + -1.3
917,304 + +2.0
917,331 - -0.2
917,331 + +0.1
917,356 - +0.8
917,439 + +0.5
917,442 - -0.5
917,445 + +0.8
917,446 - -1.8
917,453 - +2.6
917,460 - +0.2
917,493 - +0.4
917,493 - +1.0
917,495 + +0.8
917,498 - +0.7
917,499 + -1.0
917,502 - +0.7
917,506 + +1.4
917,514 - -0.3
917,573 + -0.0
917,649 - +0.2

Or see this region's nucleotide sequence