Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8319

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16686 and 16687 are separated by 513 nucleotides16687 and 16688 are separated by 136 nucleotides mRNA_8318: 16686 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF54236, at 925,338 to 930,210 16686 mRNA_8319: 16687 - HMMPfam-Protein of unknown function (DUF2370)-PF10176, at 930,724 to 932,736 16687 mRNA_8320: 16688 - KOG1516 Carboxylesterase and related proteins, at 932,873 to 935,850 16688

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
929,990 - +0.4
930,139 - +0.4
930,151 + -0.4
930,426 - +1.3
930,426 - +2.6
930,437 + +0.8
930,450 - +1.8
930,459 + +0.9
930,463 - -0.4
930,750 - -0.4
931,339 - 16687 mRNA_8319 0.31 +0.8
931,553 + 16687 mRNA_8319 0.41 +1.6
931,888 - 16687 mRNA_8319 0.58 +1.4
932,068 - 16687 mRNA_8319 0.67 +1.8
932,167 + 16687 mRNA_8319 0.72 +1.4
932,170 + 16687 mRNA_8319 0.72 +2.0
932,183 + 16687 mRNA_8319 0.72 +0.4
932,190 + 16687 mRNA_8319 0.73 +0.4
932,194 - 16687 mRNA_8319 0.73 -1.1
932,334 - 16687 mRNA_8319 0.80 -0.3
932,369 - 16687 mRNA_8319 0.82 -0.1
932,493 + 16687 mRNA_8319 0.88 +1.3
932,500 + 16687 mRNA_8319 0.88 +0.6
932,785 - -0.5
932,941 + +0.0
933,067 + +0.3
933,082 + +0.6
933,249 + 16688 mRNA_8320 0.13 +0.4
933,528 + 16688 mRNA_8320 0.22 +0.9
933,666 + 16688 mRNA_8320 0.27 +1.9
933,669 - 16688 mRNA_8320 0.27 -0.3

Or see this region's nucleotide sequence