Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_21

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8388 and 8389 are separated by 220 nucleotides8389 and 8390 are separated by 554 nucleotides mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55,031 to 59,299 8388 mRNA_21: 8389 - SUPERFAMILY--SSF51045, at 59,520 to 60,624 8389 mRNA_22: 8390 - SUPERFAMILY--SSF51045, at 61,179 to 62,127 8390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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58,621 + 8388 mRNA_20 0.84 -0.5
58,761 + 8388 mRNA_20 0.87 +0.2
58,774 + 8388 mRNA_20 0.88 +0.2
58,781 - 8388 mRNA_20 0.88 +0.3
58,897 + +1.2
59,466 + -1.1
59,533 - +2.5
59,766 - 8389 mRNA_21 0.22 +1.0
60,085 + 8389 mRNA_21 0.51 +0.1
60,661 - -0.8
60,678 - -0.3
60,688 - -0.3
61,142 - +0.3
61,523 - 8390 mRNA_22 0.36 +0.3

Or see this region's nucleotide sequence