Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_58

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8425 and 8426 are separated by 663 nucleotides8426 and 8427 are separated by 260 nucleotides mRNA_57: 8425 - K15176 CTR9 RNA polymerase-associated protein CTR9, at 133,642 to 138,012 8425 mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138,676 to 140,962 8426 mRNA_59: 8427 - Hypothetical Protein, at 141,223 to 142,116 8427

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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137,847 + +2.5
138,126 - -1.8
138,131 - +0.9
138,147 - +1.6
138,156 + +0.0
138,164 + +0.6
138,186 + +0.3
138,187 - +0.4
138,238 - +1.0
138,293 - -0.8
138,302 - +1.2
138,314 - +1.3
138,322 + +2.0
138,328 + -1.6
138,335 - -0.2
138,461 - +0.1
138,645 + +1.6
138,649 - +2.4
138,661 - -0.2
138,947 + 8426 mRNA_58 0.12 -0.8
139,216 - 8426 mRNA_58 0.24 +0.9
139,335 + 8426 mRNA_58 0.29 +1.3
139,369 - 8426 mRNA_58 0.30 -0.2
139,376 + 8426 mRNA_58 0.31 +1.1
139,396 + 8426 mRNA_58 0.31 -0.4
139,428 - 8426 mRNA_58 0.33 -0.3
139,522 + 8426 mRNA_58 0.37 +1.3
139,649 - 8426 mRNA_58 0.43 +0.1
139,981 - 8426 mRNA_58 0.57 +1.3
140,148 + 8426 mRNA_58 0.64 +0.8
140,276 - 8426 mRNA_58 0.70 +1.9
140,436 - 8426 mRNA_58 0.77 -1.8
140,440 + 8426 mRNA_58 0.77 +1.7
140,545 - 8426 mRNA_58 0.82 +0.3
140,593 - 8426 mRNA_58 0.84 +0.1
140,696 - 8426 mRNA_58 0.88 -0.4
140,902 + -0.5
141,132 - -0.5
141,177 - +0.0
141,196 + -0.6
141,449 - 8427 mRNA_59 0.25 -0.2
141,460 - 8427 mRNA_59 0.27 +1.6
141,509 - 8427 mRNA_59 0.32 -0.3
141,518 - 8427 mRNA_59 0.33 -0.2
141,747 + 8427 mRNA_59 0.59 +1.8
141,774 + 8427 mRNA_59 0.62 -2.1
141,788 - 8427 mRNA_59 0.63 -1.2
141,818 - 8427 mRNA_59 0.67 +1.3
141,824 - 8427 mRNA_59 0.67 -0.1
141,907 - 8427 mRNA_59 0.77 -0.3

Or see this region's nucleotide sequence