Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_64

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8431 and 8432 are separated by 373 nucleotides8432 and 8433 are separated by 147 nucleotides mRNA_63: 8431 - K01800 maiA, GSTZ1 maleylacetoacetate isomerase, at 147,081 to 148,199 8431 mRNA_64: 8432 - HMMPfam-Transcription initiation factor TFIID component TAF4 family-PF05236, at 148,573 to 150,625 8432 mRNA_65: 8433 - K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1, at 150,773 to 154,577 8433

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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147,574 + 8431 mRNA_63 0.44 +0.4
148,110 - +1.1
148,151 + +0.2
148,306 + +3.5
148,419 - -1.0
148,426 - +0.7
148,435 - -0.8
148,437 + -0.3
148,448 - +1.1
149,381 + 8432 mRNA_64 0.39 +0.5
150,642 - -0.3
150,829 - -1.4
150,968 - -1.2
151,142 - -0.9

Or see this region's nucleotide sequence