Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_112

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8479 and 8480 are separated by 396 nucleotides8480 and 8481 are separated by 114 nucleotides8481 and 8482 are separated by 348 nucleotides mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260,930 to 263,760 8479 mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264,157 to 266,973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267,088 to 267,405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267,754 to 270,066 8482

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
263,436 + 8479 mRNA_111 0.89 -2.0
263,490 + -0.4
263,492 + -0.3
263,503 + +0.6
263,503 + -0.3
263,504 + -0.1
263,507 + +1.0
263,517 - -0.1
263,519 - -0.0
263,539 + +1.2
263,613 + +0.3
263,625 - +1.1
263,641 - +0.9
263,663 + -0.2
263,672 + -0.3
263,683 + +1.6
263,786 + +0.5
263,798 - -0.2
263,822 + -0.8
263,859 + -0.2
263,865 + -0.8
263,875 + -0.4
263,924 - -0.9
264,050 + -0.4
264,089 - +0.9
264,418 + +1.0
264,544 + 8480 mRNA_112 0.14 +0.4
264,554 + 8480 mRNA_112 0.14 +0.2
264,567 + 8480 mRNA_112 0.15 -2.4
264,992 + 8480 mRNA_112 0.30 +0.1
265,001 - 8480 mRNA_112 0.30 +0.3
265,110 - 8480 mRNA_112 0.34 -0.9
265,110 - 8480 mRNA_112 0.34 +0.0
265,110 - 8480 mRNA_112 0.34 +1.0
265,110 - 8480 mRNA_112 0.34 -1.4
265,116 + 8480 mRNA_112 0.34 -1.0
265,116 + 8480 mRNA_112 0.34 +0.0
265,116 + 8480 mRNA_112 0.34 +0.5
265,117 + 8480 mRNA_112 0.34 +0.1
265,132 - 8480 mRNA_112 0.35 -0.6
265,436 + 8480 mRNA_112 0.45 +1.8
265,542 - 8480 mRNA_112 0.49 +1.3
265,586 + 8480 mRNA_112 0.51 +0.3
265,681 - 8480 mRNA_112 0.54 -1.0
265,710 - 8480 mRNA_112 0.55 +1.3
265,868 + 8480 mRNA_112 0.61 +0.7
265,875 - 8480 mRNA_112 0.61 +0.7
265,999 - 8480 mRNA_112 0.65 -0.7
266,128 - 8480 mRNA_112 0.70 +0.6
266,165 - 8480 mRNA_112 0.71 +1.0
266,180 + 8480 mRNA_112 0.72 +1.4
266,296 - 8480 mRNA_112 0.76 -1.0
266,589 - 8480 mRNA_112 0.86 +1.2
266,739 - +1.6
266,777 + -0.1
266,894 - +0.8
266,900 + +0.7
266,900 + +0.3
267,130 - 8481 mRNA_113 0.13 +1.1
267,140 - 8481 mRNA_113 0.16 +1.5
267,314 - 8481 mRNA_113 0.71 -0.4
267,332 + 8481 mRNA_113 0.77 +1.9
267,340 - 8481 mRNA_113 0.79 +1.8
267,482 + +3.6
267,499 + +1.4
267,885 + +2.0
267,886 - +1.5

Or see this region's nucleotide sequence