Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_193

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8560 and 8561 are separated by 354 nucleotides mRNA_192: 8560 - HMMPfam-SUR7/PalI family-PF06687, at 467,837 to 468,649 8560 mRNA_193: 8561 - K14573 NOP4, RBM28 nucleolar protein 4, at 469,004 to 472,832 8561

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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468,228 + 8560 mRNA_192 0.48 -0.2
468,368 + 8560 mRNA_192 0.65 +1.0
468,479 - 8560 mRNA_192 0.79 -0.3
468,533 + 8560 mRNA_192 0.86 +1.2
468,753 + +0.6
468,771 - -0.5
468,772 + +0.8
468,774 + +0.2
468,776 + +1.0
468,792 - -0.3
468,793 + -0.9
468,804 - -1.3
468,819 + +2.0
468,839 + -1.7
468,950 - +0.6
468,978 - +0.9
469,007 + -1.0
472,879 + -0.1
472,892 - +0.2
472,894 + +3.1
473,064 - +0.5
473,084 - +0.8
473,085 - +1.8
473,093 + -0.3
473,102 + -0.8
473,102 - -0.7
473,111 - -0.4
473,115 + -0.5
473,154 - +1.3
473,169 + +0.8
473,169 - +0.6
473,176 + -0.4
473,188 + +1.1
473,188 - +1.3
473,193 + -0.4
473,199 + +2.3
473,210 - -0.2
473,211 + +2.4
473,224 + +0.5
473,228 + -0.4
473,230 - +1.5
473,231 - +0.9
473,239 - +2.2
473,243 + -0.6
473,244 + -1.6
473,247 + +0.1
473,250 + +0.6
473,269 + +0.3
473,280 + +0.3
473,283 - -0.8
473,297 - +0.2
473,302 + +0.6
473,323 - -0.3
473,351 - +0.7
473,358 - +0.0
473,365 - -1.6
473,368 + -0.2
473,393 - -0.2
473,394 + -0.1
473,403 + +2.9
473,406 - +2.6
473,414 + -0.9
473,425 + +1.4
473,466 + -0.1
473,474 - +0.0
473,479 + -1.6
473,482 - +1.5
473,489 - +0.5
473,503 - -0.0
473,509 + +1.3
473,510 - -0.4
473,523 - +0.0
473,545 - -0.0
473,578 - +1.4
473,610 - -0.2
473,611 + -0.7
473,658 + +0.3
473,671 + +1.2
473,695 - +0.3
473,718 - +1.6
473,770 - +1.9
473,790 - +0.7
473,796 - -0.2

Or see this region's nucleotide sequence