Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_233

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8599 and 8600 are separated by 259 nucleotides8600 and 8601 are separated by 155 nucleotides8601 and 8602 are separated by 79 nucleotides mRNA_231: 8599 - HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371, at 569,811 to 575,068 8599 mRNA_232: 8600 - KOG1773 Stress responsive protein, at 575,328 to 575,800 8600 mRNA_233: 8601 - K06287 maf septum formation protein, at 575,956 to 577,138 8601 mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577,218 to 578,179 8602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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575,312 - +0.2
575,673 - 8600 mRNA_232 0.73 -0.7
575,789 + +0.6
575,911 - -0.0
575,913 + -0.5
576,234 - 8601 mRNA_233 0.23 -0.1
576,244 + 8601 mRNA_233 0.24 +0.4
576,244 - 8601 mRNA_233 0.24 -1.0
577,257 + -0.8
577,379 + 8602 mRNA_234 0.17 -1.4
577,982 - 8602 mRNA_234 0.79 -1.9
578,093 - +0.9

Or see this region's nucleotide sequence