Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_249

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8616 and 8617 are separated by 175 nucleotides8617 and 8618 are separated by 832 nucleotides mRNA_248: 8616 - K01796 E5.1.99.4, AMACR, mcr alpha-methylacyl-CoA racemase, at 603,396 to 605,038 8616 mRNA_249: 8617 - K03538 POP4, RPP29 ribonuclease P protein subunit POP4, at 605,214 to 606,480 8617 mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607,313 to 608,781 8618

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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604,349 + 8616 mRNA_248 0.58 +0.5
604,379 - 8616 mRNA_248 0.60 +2.1
604,516 - 8616 mRNA_248 0.68 +0.0
604,521 + 8616 mRNA_248 0.68 +1.0
604,804 - 8616 mRNA_248 0.86 -0.7
604,812 - 8616 mRNA_248 0.86 +1.1
604,817 + 8616 mRNA_248 0.86 +1.1
604,958 + +2.1
605,085 - +1.3
605,089 - +0.5
605,099 + -0.7
605,101 + -0.2
605,110 - +0.2
605,118 + +1.9
605,119 + +0.0
605,137 + +0.5
605,138 + +1.7
605,213 - -0.5
606,614 + +1.0
606,728 - -0.9
606,751 + -0.8
606,833 + -0.8
606,854 + +1.5
606,860 + +0.6
606,877 + -0.3
606,919 - +1.4
607,038 + +0.8
607,177 + +0.2
607,186 + +1.8
607,199 - +0.6
607,479 + 8618 mRNA_250 0.11 -0.9

Or see this region's nucleotide sequence