Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_263

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8630 and 8631 are separated by 832 nucleotides mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997 8630 mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629,830 to 634,837 8631

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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629,082 - +0.4
629,376 - +2.0
629,376 + +0.6
629,391 + -1.2
629,392 + -1.4
629,530 - -0.3
629,823 - +0.2
629,856 + -0.6
629,940 - +0.7
630,088 + -1.4
633,324 + 8631 mRNA_263 0.70 +0.1
634,033 + 8631 mRNA_263 0.84 -0.1
634,048 - 8631 mRNA_263 0.84 -0.5
634,056 + 8631 mRNA_263 0.84 +1.6
634,160 - 8631 mRNA_263 0.86 +0.0
634,160 + 8631 mRNA_263 0.86 +0.4
634,165 - 8631 mRNA_263 0.87 +0.4
634,179 + 8631 mRNA_263 0.87 -1.1
634,182 + 8631 mRNA_263 0.87 +0.7
634,192 - 8631 mRNA_263 0.87 +1.1
634,264 - 8631 mRNA_263 0.89 -0.2
634,374 + -0.1
634,400 - -1.8
634,621 + +1.7
634,656 + -0.0
634,759 - +0.2
634,766 + +1.1
634,783 + -1.0
634,787 - -0.6
634,917 + +0.9
634,917 + -1.8
634,918 - +0.4
634,920 - +0.9
634,927 - -0.6
634,929 + -0.4
634,930 - +0.3
634,933 - +0.7
634,933 + +1.9
634,936 - -1.2
634,940 + +0.7
634,940 - +0.4
634,941 - -0.3
634,941 + +0.4
634,943 - +1.6
634,943 - +0.4
634,947 - +1.5
634,947 + -0.1
634,952 + +2.5
634,952 + +1.7
634,955 - -0.1
634,955 - +0.1
634,960 - +0.9
634,964 + +1.0
634,965 - +0.7
634,966 + +0.2
634,968 + +0.0
634,975 - +2.4
634,987 + +0.6
634,990 + +1.2
634,998 - -1.3
635,047 - +0.8
635,056 + +0.4
635,169 + +1.9
635,179 + +1.0
635,185 - -0.1
635,193 - +1.2
635,204 + +0.1
635,209 + +1.0
635,211 + -1.5
635,325 - -0.9
635,329 - -0.7
635,362 - -0.0
635,772 - -1.5

Or see this region's nucleotide sequence